##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index12_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20868140	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.936791683398713	33.0	31.0	34.0	30.0	34.0
2	32.032028393522374	34.0	31.0	34.0	30.0	34.0
3	32.083611284954	34.0	31.0	34.0	30.0	34.0
4	35.54291623498788	37.0	35.0	37.0	33.0	37.0
5	35.542671028659	37.0	35.0	37.0	33.0	37.0
6	35.54139750835484	37.0	35.0	37.0	33.0	37.0
7	35.4539912517359	37.0	35.0	37.0	33.0	37.0
8	35.452863072607336	37.0	35.0	37.0	33.0	37.0
9	36.97985805155611	39.0	37.0	39.0	33.0	39.0
10-14	37.380277648127716	39.2	37.2	39.4	33.2	39.4
15-19	38.44083304980703	40.0	38.0	41.0	33.6	41.0
20-24	38.26168173109822	40.0	38.0	41.0	33.4	41.0
25-29	38.173368436286125	40.0	38.0	41.0	33.0	41.0
30-34	38.074625596723045	40.0	38.0	41.0	33.0	41.0
35-39	37.8559836861359	40.0	37.2	41.0	32.8	41.0
40-44	37.48574389476015	39.8	36.6	41.0	31.6	41.0
45-49	37.06936902857658	39.0	35.6	41.0	31.0	41.0
50-54	36.259013913075144	38.2	34.6	40.0	29.8	40.6
55-59	36.13492380250468	38.0	34.6	40.0	29.6	41.0
60-64	35.61845779259676	37.0	34.0	40.0	29.0	41.0
65-69	35.12299494828001	36.2	34.0	39.4	29.0	41.0
70-74	34.31304904989136	35.0	34.0	38.2	28.6	40.4
75-79	33.438029675859944	35.0	33.0	36.6	27.4	39.0
80-84	32.61371029713238	35.0	33.0	35.6	26.4	37.2
85-89	31.767125311599404	35.0	32.4	35.0	25.2	36.2
90	31.27243827193032	35.0	32.0	35.0	24.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	191.0
11	1787.0
12	5221.0
13	10133.0
14	16439.0
15	22671.0
16	28549.0
17	34321.0
18	39564.0
19	46737.0
20	56167.0
21	66274.0
22	78576.0
23	95380.0
24	117580.0
25	144646.0
26	179458.0
27	222682.0
28	272662.0
29	330971.0
30	409928.0
31	514799.0
32	653736.0
33	852414.0
34	1159522.0
35	1672700.0
36	2597660.0
37	3908617.0
38	4506409.0
39	2732892.0
40	89453.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.133718702085833	12.007201705524432	10.50333790909464	52.3557416832951
2	21.547827521939272	19.075536836297456	35.61608288573962	23.760552756023653
3	25.41865242630341	21.353437447183836	22.526057816619346	30.701852309893408
4	27.573747601188682	27.369653069096582	19.08943105062228	25.967168279092462
5	29.136830531907655	29.70324624833427	21.643838420178106	19.516084799579968
6	24.230421877455626	32.646014656692515	21.89992558655908	21.223637879292777
7	21.403098564519585	18.69139116128117	37.53480306892302	22.370707205276226
8	21.590511574944323	22.181265934865795	29.090732310395452	27.137490179794426
9	21.669665174761196	21.07845524624605	31.471126763742824	25.780752815249926
10-14	24.50211162048145	26.31336398006464	24.65321137639856	24.531313023055347
15-19	24.836962946613447	25.179348751596546	25.13767828891606	24.846010012873947
20-24	24.601474020366553	25.43475330051138	25.5018087058011	24.461963973320973
25-29	24.46421146585162	25.46926749795767	25.42440656942475	24.642114466765964
30-34	24.493184895115107	25.40458910667403	25.388068517402047	24.714157480808822
35-39	24.485660030303556	25.56229147879337	25.361154016723976	24.5908944741791
40-44	24.464542988256273	25.389364530222135	25.50266852566333	24.643423955858264
45-49	24.397463817156524	25.45464151525161	25.423785934599874	24.72410873299199
50-54	24.44206978160493	25.527317642922743	25.467242656058573	24.563369919413756
55-59	24.450086831434305	25.459577672582874	25.42537185824234	24.66496363774048
60-64	24.338330758625997	25.488294282420576	25.54946001595692	24.623914942996507
65-69	24.376220676273885	25.60432038711423	25.53019480166285	24.489264134949032
70-74	24.406636336296685	25.537759667928828	25.440936308130258	24.614667687644236
75-79	24.410585005779534	25.48252465081274	25.533286302732318	24.573604040675413
80-84	24.336939078622546	25.61962438680716	25.543907444858423	24.49952908971187
85-89	24.454295046199825	25.577027365282458	25.46892400158334	24.49975358693438
90	24.16278156252661	25.689244478129964	25.695483838690393	24.452490120653035
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.48946038538092
2	45.308380277962925
3	56.12050473619682
4	53.54091588028113
5	48.65291533148762
6	45.45405975674841
7	43.77380576979581
8	48.72800175473875
9	47.450417990011125
10-14	49.0334246435368
15-19	49.682972959487394
20-24	49.06343799368752
25-29	49.10632593261759
30-34	49.20734237592392
35-39	49.07655450448266
40-44	49.10796694411454
45-49	49.121572550148514
50-54	49.00543970101868
55-59	49.11505046917479
60-64	48.9622457016225
65-69	48.86548481122291
70-74	49.02130402394092
75-79	48.984189046454944
80-84	48.83646816833442
85-89	48.9540486331342
90	48.61527168317964
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	13.0
1	15.0
2	17.0
3	23.5
4	36.0
5	42.0
6	54.5
7	77.0
8	109.0
9	151.5
10	172.0
11	206.5
12	270.5
13	369.5
14	549.5
15	834.5
16	1325.5
17	2209.0
18	3579.0
19	6082.0
20	7782.0
21	10328.0
22	16870.5
23	27046.0
24	41138.5
25	60312.0
26	85427.5
27	116704.0
28	151561.5
29	188909.0
30	208820.0
31	229361.0
32	272267.5
33	319940.0
34	371860.5
35	422409.5
36	472898.0
37	530866.5
38	582253.5
39	622490.0
40	642755.0
41	656260.5
42	683481.0
43	709030.0
44	723584.0
45	728129.5
46	727445.5
47	722133.0
48	721008.5
49	719272.5
50	715858.0
51	708838.0
52	701695.5
53	690251.5
54	682384.5
55	682091.5
56	672135.5
57	657335.0
58	636233.0
59	607903.0
60	592083.0
61	575854.5
62	540446.0
63	496368.0
64	444797.5
65	392456.0
66	338171.5
67	281691.0
68	231753.5
69	184746.0
70	159811.0
71	139278.0
72	101830.0
73	71044.5
74	45787.5
75	26885.0
76	14845.0
77	7601.5
78	3547.5
79	1579.5
80	946.0
81	694.5
82	337.5
83	181.0
84	115.0
85	92.0
86	64.5
87	39.5
88	31.0
89	23.5
90	19.0
91	14.5
92	11.5
93	14.0
94	11.5
95	6.0
96	3.0
97	1.5
98	0.5
99	1.5
100	3.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.29423801067081207
2	0.22427489944000759
3	0.28240657768253424
4	0.3046030935195949
5	0.2609336529273812
6	0.17194632583450178
7	0.22034546442567474
8	0.24614555969051385
9	0.22899022145720702
10-14	0.20331471803428577
15-19	0.17767659216393988
20-24	0.2059273131194251
25-29	0.03676034375847584
30-34	0.004052110058682758
35-39	0.004877291411692657
40-44	0.009458437599134374
45-49	0.01220329171646347
50-54	0.007437174563712913
55-59	0.004444095161332059
60-64	0.010583597771531146
65-69	0.005371825184228207
70-74	1.6963658476510125E-4
75-79	1.1884144921396924E-4
80-84	0.0032748486448720394
85-89	0.001601484368036634
90	0.0029566602485894765
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.086814E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.7840768426204
#Duplication Level	Relative count
1	100.0
2	30.41234972904512
3	16.06523680003322
4	9.777214874488715
5	6.694973319768287
6	4.979963872682349
7	3.8276270165894983
8	3.0645931524199073
9	2.6856715736146004
10++	30.12063202043062
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4396080	2.6214144	5.5452056	1
CCTGG	4374135	2.5908706	6.235594	1
CTTCT	4582390	2.5098817	5.573294	1
CTGGA	4174430	2.4406939	8.946774	1
TCCAG	4115700	2.3600307	5.7660713	2
CTGCT	4057820	2.3112671	5.0917296	1
CTCCT	4123400	2.3034074	7.900426	1
CTGGG	3760650	2.2712173	8.544562	1
CAGGA	3814955	2.2455463	5.51656	1
CTTCA	3982520	2.196017	5.757707	1
CCCAG	3710610	2.1700673	7.3488946	1
CTCCA	3847855	2.1639664	8.186572	1
CAGAA	3655945	2.083304	5.0537486	1
CTCTG	3543790	2.018484	6.4020348	1
CTGGC	3196700	1.8934572	5.5754814	1
TGGAA	3223800	1.8605732	5.215253	2
CTGAA	3240515	1.8342161	5.5202327	1
CTCAG	3023045	1.7334789	6.2309184	1
CTTTG	3040070	1.6978016	5.0622196	1
CTGGT	2882595	1.674107	5.2597528	1
CTTGG	2821895	1.6388544	5.426693	1
CTCCC	2723045	1.5514011	5.197883	1
>>END_MODULE
